miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001364
species: Leymus cinereus x Leymus triticoides
miRNA family: MIRf1628
source: miRNEST

Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTCGTCGCCGACGAGTGGGGC

miRNA*
CCCTACAGTCGACGACGACGA

mismatches: 2
bulges: 2

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pre-miRNA
CCGAGATCCCCGACCCTACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCCGCTTCCGCGTCGGGTAACTCGCGCCCCGTCGTCGCCGACGAGTGGGG
C
GAGCCGGGGG


dot-bracket secondary structure
......((((((.((((((.((((.(((((((....(((((.(((((..((((((......).)))))..))))))))))))))))).))))..))))))
.
....))))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q7XBW5|PAP3_ORYSJ: 0.000000003

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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